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lcdH protein (Sinorhizobium fredii NGR234) - STRING interaction network
"lcdH" - L-carnitine dehydrogenase in Sinorhizobium fredii NGR234
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcdHL-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine (534 aa)    
Predicted Functional Partners:
NGR_c05020
annotation not available (399 aa)
 
  0.972
NGR_c29930
annotation not available (393 aa)
 
  0.971
NGR_c32720
annotation not available (393 aa)
 
  0.971
NGR_c21590
annotation not available (475 aa)
 
   
  0.971
paaN
annotation not available (685 aa)
   
 
  0.970
NGR_c26200
annotation not available (138 aa)
   
  0.966
fadA
annotation not available (402 aa)
   
  0.966
NGR_c26080
annotation not available (710 aa)
 
 
0.946
NGR_c21570
annotation not available (300 aa)
 
   
  0.943
NGR_c33030
annotation not available (259 aa)
 
  0.943
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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