Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cbtBPutative cobalt transporter, subunit CbtB. (58 aa)    
Predicted Functional Partners:
cbtA
Putative cobalt transporter, subunit CbtA.
 
  
 0.889
ACP24781.1
Putative transmembrane protein.
  
     0.673
nirV
NirV periplasmic nitrate reductase.
  
     0.555
ACP24782.1
Putative universal stress protein.
  
     0.542
ACP26698.1
Hypothetical protein.
  
     0.485
ACP24486.1
Putative phage integrase.
  
     0.473
ACP26135.1
Conserved hypothetical protein.
  
     0.437
ACP25829.1
Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein.
  
     0.418
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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