Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP25957.1TPR domain protein. (393 aa)    
Predicted Functional Partners:
ACP25764.1
Hypothetical protein.
 
  
 0.883
cya4
Adenylate cyclase Cya3.
 
     0.857
ACP25504.1
Putative transmembrane permease component of ABC transporter.
  
  
 0.726
ACP25045.1
Putative nitroreductase protein.
  
  
 0.698
ACP27092.1
Nitroreductase family protein.
  
  
 0.698
ACP25958.1
Hypothetical protein.
       0.682
bluB
Putative nitroreductase, BluB-like protein.
  
  
 0.607
ACP25960.1
Putative transcriptional regulator, XRE familiy.
       0.515
ACP24277.1
Putative flagella associated protein.
  
    0.492
ACP25766.1
Putative adenylate cyclase.
 
   
 0.473
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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