Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP25980.1Hypothetical protein. (294 aa)    
Predicted Functional Partners:
ftsK2
DNA translocase FtsK.
   
 
 0.732
ACP23970.1
Hypothetical protein contains peptidoglycan binding domain.
  
 
 0.711
ACP25481.1
OmpA family protein.
   
 
 0.675
ACP25763.1
Hypothetical protein.
  
 
 0.657
ACP24365.1
Hypothetical protein.
    
 
 0.621
ctpA
Carboxy-terminal processing protease; Belongs to the peptidase S41A family.
  
 
 0.600
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
   
 
 0.526
ACP24009.1
Beta-ketoacyl synthase.
  
 
 0.523
ACP26446.1
Putative transmembrane protein.
    
 
 0.500
ACP25981.1
Putative oxidoreductase.
       0.439
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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