STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspEGeneral secretion pathway protein E, GspE. (545 aa)    
Predicted Functional Partners:
gspF
General secretion pathway protein F, GspF.
 
 
 0.997
gspG
General secretion pathway protein G, GspG.
 
 
 0.993
gspL
Putative general secretion pathway protein L, GspL.
 
 
 0.975
gspD
General secretion pathway protein D, GspD.
 
  
 0.960
ACP26068.1
Peptidase A24A domain protein.
 
 
 0.926
gspK
General secretory pathway protein K, GspK.
  
  
 0.862
gspJ
General secretion protein GspJ.
  
  
 0.855
gspH
General secretion pathway protein GspH.
     
 0.833
gspI
Putative general secretion pathway protein I, GspI.
       0.773
ACP26064.1
Hypothetical protein, posssibly linked to the general secretion pathway.
       0.773
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.