Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP26119.1Hypothetical protein. (382 aa)    
Predicted Functional Partners:
ACP26118.1
Hypothetical protein.
 
     0.955
ACP26117.1
Hypothetical protein.
 
     0.947
ACP26120.1
Hypothetical protein.
 
     0.918
ACP26116.1
Putative transmembrane protein.
 
     0.860
ACP26102.1
Conserved hypothetical protein.
  
     0.734
ACP24180.1
Hypothetical protein.
  
     0.720
ACP23966.1
Hypothetical protein.
  
     0.647
ACP24631.1
Hypothetical protein.
  
     0.640
ACP25059.1
Hypothetical protein.
  
     0.615
ACP27140.1
Hydantoinase/oxoprolinase family protein.
  
     0.540
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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