Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACP26135.1Conserved hypothetical protein. (334 aa)    
Predicted Functional Partners:
ACP25691.1
Hypothetical protein.
  
     0.694
nirV
NirV periplasmic nitrate reductase.
 
     0.596
ACP26116.1
Putative transmembrane protein.
  
     0.576
ACP24123.1
Hypothetical protein.
  
     0.542
ACP26134.1
Putative transmembrane protein.
       0.537
ACP26133.1
Putative transmembrane protein.
 
     0.521
ACP24782.1
Putative universal stress protein.
  
     0.509
ACP26424.1
Conserved hypothetical protein.
 
   
 0.490
ACP25605.1
Formyl transferase domain protein.
 
  
 0.486
fixH
Putative nitrogen fixation protein FixH.
  
     0.476
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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