Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACP26194.1 | ACP26195.1 | NGR_c24370 | NGR_c24380 | Cephalosporin hydroxylase. | Hypothetical protein. | 0.827 |
ACP26194.1 | ACP26196.1 | NGR_c24370 | NGR_c24390 | Cephalosporin hydroxylase. | Putative acetyltransferase protein. | 0.766 |
ACP26194.1 | rmlC | NGR_c24370 | NGR_c24400 | Cephalosporin hydroxylase. | dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. | 0.809 |
ACP26195.1 | ACP26194.1 | NGR_c24380 | NGR_c24370 | Hypothetical protein. | Cephalosporin hydroxylase. | 0.827 |
ACP26195.1 | ACP26196.1 | NGR_c24380 | NGR_c24390 | Hypothetical protein. | Putative acetyltransferase protein. | 0.814 |
ACP26195.1 | rmlC | NGR_c24380 | NGR_c24400 | Hypothetical protein. | dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. | 0.732 |
ACP26195.1 | rplD | NGR_c24380 | NGR_c11920 | Hypothetical protein. | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.751 |
ACP26195.1 | rpsC | NGR_c24380 | NGR_c11970 | Hypothetical protein. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.739 |
ACP26195.1 | rpsH | NGR_c24380 | NGR_c12050 | Hypothetical protein. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.727 |
ACP26195.1 | rpsL | NGR_c24380 | NGR_c11860 | Hypothetical protein. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.735 |
ACP26195.1 | rpsN | NGR_c24380 | NGR_c12040 | Hypothetical protein. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.741 |
ACP26195.1 | rpsQ | NGR_c24380 | NGR_c12000 | Hypothetical protein. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.769 |
ACP26195.1 | rpsS | NGR_c24380 | NGR_c11950 | Hypothetical protein. | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.743 |
ACP26196.1 | ACP26194.1 | NGR_c24390 | NGR_c24370 | Putative acetyltransferase protein. | Cephalosporin hydroxylase. | 0.766 |
ACP26196.1 | ACP26195.1 | NGR_c24390 | NGR_c24380 | Putative acetyltransferase protein. | Hypothetical protein. | 0.814 |
ACP26196.1 | rmlC | NGR_c24390 | NGR_c24400 | Putative acetyltransferase protein. | dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. | 0.806 |
rmlC | ACP26194.1 | NGR_c24400 | NGR_c24370 | dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. | Cephalosporin hydroxylase. | 0.809 |
rmlC | ACP26195.1 | NGR_c24400 | NGR_c24380 | dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. | Hypothetical protein. | 0.732 |
rmlC | ACP26196.1 | NGR_c24400 | NGR_c24390 | dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. | Putative acetyltransferase protein. | 0.806 |
rplD | ACP26195.1 | NGR_c11920 | NGR_c24380 | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | Hypothetical protein. | 0.751 |
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