STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rmlCdTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (177 aa)    
Predicted Functional Partners:
ugdH
UDP-glucose 6-dehydrogenase; UDP-Glc dehydrogenase; UDP-GlcDH; UDPGDH.
  
  
 0.918
ACP26423.1
Putative polysaccharide export related protein.
  
  
 0.913
ACP24033.1
UDP-galactopyranose mutase.
 
  
 0.910
ddhA
LPS side chain defect: glucose-1-phosphate cytidylyltransferase.
 
  
 0.903
ACP27115.1
Putative nucleotidyl transferase protein.
  
  
 0.837
ACP26194.1
Cephalosporin hydroxylase.
 
     0.809
ACP26196.1
Putative acetyltransferase protein.
  
  
 0.806
ACP26195.1
Hypothetical protein.
  
  
 0.732
ACP24799.1
Predicted glycosyl transferase.
 
  
 0.722
ddhB
CDP-glucose 4,6-dehydratase.
 
  
 0.673
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.