STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP26245.1ABC transporter, membrane spanning protein. (289 aa)    
Predicted Functional Partners:
ACP26246.1
ABC-type nitrate/sulfonate/bicarbonate transportsystems periplasmic components-like protein.
 
  
 0.970
ACP26243.1
ABC nitrate transporter, nucleotide binding/ATPase protein.
  
 0.963
ACP26244.1
ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit.
 
    
0.855
ssuB
Aliphatic sulfonates import ATP-binding protein SsuB; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
  
 0.812
ACP26322.1
Putative ABC transporter, substrate binding protein.
 
  
 0.790
dht
Dihydropyrimidinase.
 
     0.635
ACP26234.1
Dihydropyrimidine dehydrogenase.
 
    0.609
ACP26239.1
Putative transcriptional regulator, TetR family.
 
     0.518
ssuD
Alkanesulfonate monooxygenase 2; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
 
  
 0.481
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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