STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speBAgmatinase SpeB; Belongs to the arginase family. (351 aa)    
Predicted Functional Partners:
ACP26492.1
Phenylalanine/histidine ammonia-lyase.
 
  
 0.658
ACP26295.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.631
ACP26296.1
Putative aminotransferase.
 
  
 0.583
ACP26293.1
Putative solute-binding component of ABC transporter; Belongs to the bacterial solute-binding protein 3 family.
  
  
 0.570
ACP26286.1
Putative hydrolase.
 
 0.552
ACP26290.1
Putative substrate-binding component of ABC transporter.
 
   
 0.478
putA1
Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
 0.455
putA2
Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
 0.455
ACP26604.1
Putative amidohydrolase.
  
  
 0.453
ACP24399.1
long-chain-fatty-acid--CoA ligase.
     
 0.449
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.