STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP26296.1Putative aminotransferase. (392 aa)    
Predicted Functional Partners:
ACP26295.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.657
ACP26290.1
Putative substrate-binding component of ABC transporter.
 
    0.603
speB
Agmatinase SpeB; Belongs to the arginase family.
 
  
 0.583
ACP26281.1
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   0.523
ACP24416.1
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.513
gltB1
Glutamate synthase [NADPH] large chain.
  
  
 0.471
ACP24399.1
long-chain-fatty-acid--CoA ligase.
  
 
 0.470
ACP24009.1
Beta-ketoacyl synthase.
  
 
 0.436
ACP26286.1
Putative hydrolase.
 
  
 0.419
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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