STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP26323.1Putative dehydrogenase; Belongs to the GcvT family. (853 aa)    
Predicted Functional Partners:
gcvP
Decarboxylating glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.978
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
 
 0.961
soxD1
Sarcosine oxidase, delta subunit.
 
 
 0.933
soxD2
Sarcosine oxidase, delta subunit.
 
 
 0.915
soxG1
Sarcosine oxidase, gamma subunit.
 
 
 0.905
soxA1
Sarcosine oxidase, alpha subunit.
 
 
0.901
soxA2
Sarcosine oxidase, alpha subunit.
 
 
0.897
ACP25942.1
FAD dependent oxidoreductase/aminomethyl transferase; Belongs to the GcvT family.
 
 
0.871
soxG2
Sarcosine oxidase, gamma subunit.
  
 
 0.866
ACP25943.1
Dimethylglycine dehydrogenase precursor; Belongs to the GcvT family.
 
 
0.864
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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