STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iolCMyo-inositol catabolism IolC. (637 aa)    
Predicted Functional Partners:
iolB
Myo-inositol catabolism IolB domain protein.
 
 
 0.997
iolD
Myo-inositol catabolism, acetolactate synthase protein IolD; Belongs to the TPP enzyme family.
 
  
 0.989
ACP27423.1
Thiamine pyrophosphate domain protein, TPP binding region; Belongs to the TPP enzyme family.
 
  
 0.940
ACP27424.1
PfkB family carbohydrate kinase protein.
 
 
 
0.913
ACP27422.1
Xylose isomerase domain protein, TIM barrel.
  
 0.911
ACP26353.1
Putative sugar epimerase protein.
 
    0.908
iolG
Putative myo-inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
 
  
 0.843
ACP26360.1
Putative sugar ABC transporter, ATP-binding protein.
 
  
 0.826
idhA2
Myo-inositol 2-dehydrogenase.
 
  
 0.817
ACP26363.1
Putative sugar ABC transporter, substrate-binding protein.
 
  
 0.812
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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