STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaJPhenylacetic acid degradation protein PaaJ. (173 aa)    
Predicted Functional Partners:
paaI
Phenylacetic acid degradation protein PaaI.
 
 
 0.999
paaB2
Phenylacetic acid degradation protein PaaB.
 
 
 0.998
paaG
phenylacetate-CoA oxygenase PaaG.
 
 
 0.998
paaK
phenylacetate-CoA oxygenase/reductase PaaK.
 
 
 0.995
ACP26371.1
Ring-oxidation complex protein 1 in the phenylacetic acid catabolism pathway.
 
 
 0.990
paaB1
Phenylacetate degradation, enoyl-CoA hydratase PaaB.
 
 
 0.988
paaD
Phenylacetic acid degradation protein PaaD.
 
 
 0.985
paaN
Phenylacetic acid degradation protein PaaN.
 
  
 0.963
paaF
phenylacetate-CoA ligase PaaF; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
  
 0.961
ACP26377.1
Putative beta-ketoadipyl CoA thiolase.
 
  
 0.787
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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