STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP26403.1Putative metalloendopeptidase. (651 aa)    
Predicted Functional Partners:
ACP24563.1
Penicillin-binding protein 1A.
  
     0.660
ACP24901.1
Penicillin binding peptidoglycan synthetase protein.
 
   
 0.655
ACP27232.1
Penicillin-binding protein, 1A family.
  
     0.641
ACP25465.1
Hypothetical protein.
  
     0.570
lptD
Putative organic solvent tolerance protein OstA; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.547
ftsI
Penicillin-binding protein 3.
 
   
 0.540
ftsX
Putative cell division protein FtsX.
 
  
 0.534
ACP24276.1
Hypothetical protein.
  
     0.521
ACP24619.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.519
ACP25433.1
Kinesin-like protein.
  
 
   0.507
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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