STRINGSTRING
pstP protein (Sinorhizobium fredii NGR234) - STRING interaction network
"pstP" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pstPannotation not available (755 aa)    
Predicted Functional Partners:
NGR_c33890
annotation not available (96 aa)
   
 
  0.884
NGR_c00150
annotation not available (154 aa)
   
     
  0.863
lysC
annotation not available (424 aa)
              0.691
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA (352 aa)
              0.689
prmC
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif (298 aa)
              0.682
nudH
RNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5’-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage (175 aa)
   
   
  0.623
NGR_c33900
annotation not available (133 aa)
   
     
  0.547
NGR_c02250
annotation not available (158 aa)
   
          0.543
NGR_a01360
UPF0262 protein y4uD; y4uD; NGR234_387; Belongs to the UPF0262 family (165 aa)
   
          0.489
NGR_c26550
annotation not available (212 aa)
              0.473
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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