STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxD1Sarcosine oxidase, delta subunit. (113 aa)    
Predicted Functional Partners:
soxG1
Sarcosine oxidase, gamma subunit.
 
 0.999
soxA1
Sarcosine oxidase, alpha subunit.
 
 0.999
soxG2
Sarcosine oxidase, gamma subunit.
 
 0.995
soxB1
Sarcosine oxidase, beta subunit.
 
 0.993
ACP25943.1
Dimethylglycine dehydrogenase precursor; Belongs to the GcvT family.
 
 0.991
soxA2
Sarcosine oxidase, alpha subunit.
 
 
 0.989
ACP26323.1
Putative dehydrogenase; Belongs to the GcvT family.
 
 
 0.933
ACP25942.1
FAD dependent oxidoreductase/aminomethyl transferase; Belongs to the GcvT family.
 
 
 0.918
glyA
Serine hydroxymethyltransferase 1; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
  
 
  0.914
ACP26616.1
Putative low-specificity l-threonine aldolase; Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde.
    
  0.906
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.