STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP26651.1O-linked GlcNAc transferase. (295 aa)    
Predicted Functional Partners:
ctpA
Carboxy-terminal processing protease; Belongs to the peptidase S41A family.
   
 
 0.839
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.743
ACP26652.1
Hypothetical protein.
 
     0.675
ACP24608.1
Hypothetical protein; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
 
   
 0.585
sppA
Signal peptide peptidase S49, SppA.
 
  
 0.584
ACP24648.1
Hypothetical protein.
  
     0.572
ACP24133.1
Predicted sensor histidine kinase protein with ATP-binding domain.
  
   
 0.567
ACP25244.1
Putative invasion-associated protein.
  
     0.562
ACP25768.1
Exodeoxyribonuclease V.
 
     0.522
rpsU
30S ribosomal protein S21 B; Belongs to the bacterial ribosomal protein bS21 family.
       0.518
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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