STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP26688.1Putative oxidoreductase /dehydrogenase protein. (394 aa)    
Predicted Functional Partners:
ACP26690.1
Putative endonuclease.
 
  
 0.868
ACP25542.1
Hypothetical protein.
 
  
 0.681
iolB
Myo-inositol catabolism IolB domain protein.
  
  
 0.597
iolD
Myo-inositol catabolism, acetolactate synthase protein IolD; Belongs to the TPP enzyme family.
  
  
 0.521
ACP27423.1
Thiamine pyrophosphate domain protein, TPP binding region; Belongs to the TPP enzyme family.
  
  
 0.521
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.501
ACP26687.1
Beta-glucosidase.
  
    0.453
ACP24399.1
long-chain-fatty-acid--CoA ligase.
  
 
 0.442
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
  
 0.403
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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