STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Belongs to the xylose isomerase family. (436 aa)    
Predicted Functional Partners:
xylB
Xylulokinase.
 
 
 0.991
ACP26226.1
Mannitol dehydrogenase.
    
 0.928
ACP23919.1
Fructokinase protein.
 
  
 0.926
ACP26786.1
Putative sugar kinase/putative transcriptional regulator; ROK family protein yajF.
    
 0.917
glk
Glucokinase (glucose kinase) protein, Glk; Belongs to the bacterial glucokinase family.
     
 0.816
xynA
Beta-xylosidase; 1,4-beta-D-xylan xylohydrolase; xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.710
ACP26693.1
Putative transcriptional regulatory protein, LacI family.
 
   
 0.663
xylF
Xylose binding protein transport system, XylF.
 
  
 0.651
glmS2
Isomerizing glucosamine--fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
      
 0.572
ACP26690.1
Putative endonuclease.
 
   
 0.566
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.