STRINGSTRING
xylB protein (Sinorhizobium fredii NGR234) - STRING interaction network
"xylB" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBannotation not available (484 aa)    
Predicted Functional Partners:
xylA
annotation not available (436 aa)
 
 
  0.994
NGR_c06300
L-ribulose-5-phosphate 4-epimerase; Phosphoribuloseisomerase (236 aa)
 
   
  0.943
rpe
annotation not available (224 aa)
 
  0.931
NGR_c28060
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate (658 aa)
       
  0.919
cbbT
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate (663 aa)
       
  0.919
NGR_c29500
annotation not available (345 aa)
 
   
  0.912
NGR_a02440
Putative uncharacterized transketolase family protein y4mO; y4mO; NGR234_246; Belongs to the transketolase family (279 aa)
       
  0.910
NGR_a02450
Putative uncharacterized transketolase family protein y4mN; y4mN; NGR234_245 (345 aa)
       
  0.910
NGR_c37010
annotation not available (299 aa)
       
  0.908
NGR_c24690
annotation not available (494 aa)
   
  0.855
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
Server load: low (9%) [HD]