Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ACP26708.1Putative exonuclease protein involved in mRNA processing. (336 aa)    
Predicted Functional Partners:
ACP26709.1
Putative DNA ligase.
 
 0.985
ACP23975.1
Predicted ATP-dependent RNA/DNA helicase protein, DEAD/DEAH box family.
 
    0.832
ACP23974.1
Putative phosphoesterase protein.
 
     0.825
ACP25433.1
Kinesin-like protein.
    
 0.822
ACP26666.1
WD-40 repeat protein.
    
 0.822
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.754
ACP24831.1
Putative serine/threonine-specific protein phosphatase protein.
  
 0.725
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.622
ACP26532.1
Putative ATP-dependent DNA ligase protein.
 
 
 0.594
ACP23870.1
DEAD/DEAH box protein, ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
 
 0.586
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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