STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobLDecarboxylating precorrin-6Y C(5,15)-methyltransferase. (418 aa)    
Predicted Functional Partners:
cobM
Precorrin-4 C11-methyltransferase CobM; Belongs to the precorrin methyltransferase family.
  
 0.999
cobH
precorrin-8X methylmutase CobH.
 
 
 0.999
cobK
precorrin-6A reductase CobK.
 
 
 0.998
cobJ
precorrin-3B C17-methyltransferase CobJ.
 
  
 0.991
cobI
Precorrin-2 C(20)-methyltransferase CobI; Belongs to the precorrin methyltransferase family.
 
  
 0.974
cobF
Deacetylating precorrin-6A synthase CobF.
 
  
 0.973
cobN
Hydrogenobyrinicacid a,c-diamide cobaltochelatase cobN subunit.
 
  
 0.961
cobE
CobE protein.
 
  
 0.936
cobB
Cobyrinic acid A,C-diamide synthase CobB; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
 
  
 0.904
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
  
 0.881
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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