STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bkdA12-oxoisovalerate dehydrogenase, E1 component, alpha subunit. (410 aa)    
Predicted Functional Partners:
pdhB3
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
 0.999
bkdA2
2-oxoisovalerate dehydrogenase, E1 component, beta subunit.
 0.999
bkdB
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto aciddehydrogenase complex.
 
 0.999
lpdA2
Dihydrolipoamide dehydrogenase.
 
 
 0.997
ACP25069.1
Dihydrolipoyl dehydrogenase.
 
 
 0.978
lpdA1
Dihydrolipoamide dehydrogenase.
 
 
 0.974
ACP25066.1
Dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
 
 0.945
sucB2
Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
 
 0.922
ACP24520.1
Putative branched-chain-amino-acid aminotransferase.
   
 
 0.907
ilvE
Branched-chain-amino-acid aminotransferase.
   
 
 0.907
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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