STRINGSTRING
NGR_c29960 protein (Sinorhizobium fredii NGR234) - STRING interaction network
"NGR_c29960" - annotation not available in Sinorhizobium fredii NGR234
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NGR_c29960annotation not available (338 aa)    
Predicted Functional Partners:
NGR_c29950
annotation not available (212 aa)
 
 
  0.993
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate (453 aa)
 
   
  0.940
NGR_c17590
annotation not available (228 aa)
         
    0.900
NGR_c29970
annotation not available (289 aa)
              0.872
NGR_c30010
annotation not available (372 aa)
 
   
  0.840
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily (463 aa)
     
    0.832
sdhA
annotation not available (613 aa)
   
 
  0.820
NGR_c31370
annotation not available (130 aa)
   
 
    0.812
sdhB
annotation not available (259 aa)
   
 
    0.807
NGR_c31360
annotation not available (126 aa)
         
    0.800
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium fredii NGR234, Sinorhizobium sp. NGR234
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