STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP27103.1Polyhydroxyalkanoate depolymerase. (424 aa)    
Predicted Functional Partners:
phbC2
Poly(3-hydroxybutyrate) polymerase; PHB polymerase; PHB synthase; poly(3-hydroxyalkanoate) polymerase; PHA polymerase; PHA synthase; polyhydroxyalkanoic acid synthase.
 
  
 0.970
phbC1
Poly-beta-hydroxybutyrate polymerase domain protein.
 
  
 0.963
ACP27004.1
Putative polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.704
ACP25104.1
Hypothetical protein.
  
   
 0.654
ACP27101.1
Putative zinc-type alcohol dehydrogenase protein.
       0.431
ACP27102.1
Amidohydrolase 2.
       0.431
clpX
ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.426
ACP27002.1
acetoacetyl-CoA reductase.
  
   
 0.403
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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