STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capA1Type IV prepilin peptidase CpaA. (174 aa)    
Predicted Functional Partners:
cpaB1
Pilus assembly protein CpaB.
 
  
 0.980
pilA1
Probable PilA pilus assembly protein.
 
  
 0.956
cpaE1
Pilus assembly protein CpaE.
 
  
 0.946
ACP27195.1
Putative type II/IV secretion system protein TadB, Flp pilus assembly protein TadB.
 
  
 0.930
cpaC1
Pilus assembly protein CpaC, contains signal peptide; Belongs to the bacterial secretin family.
 
  
 0.926
tadG1
Flp pilus assembly protein TadG.
 
  
 0.891
pilQ1
Component of type IV pilus PilQ1; PilQ.
 
  
 0.890
cpaD
Pilus assembly protein CpaD.
 
     0.885
tadE1
Pilus assembly protein contains TadE domain.
 
  
 0.864
tadC1
Components of type IV pilus TadC.
 
   
 0.834
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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