STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpaDPilus assembly protein CpaD. (234 aa)    
Predicted Functional Partners:
cpaC1
Pilus assembly protein CpaC, contains signal peptide; Belongs to the bacterial secretin family.
 
   
 0.935
cpaE1
Pilus assembly protein CpaE.
 
     0.923
cpaB1
Pilus assembly protein CpaB.
 
     0.920
capA1
Type IV prepilin peptidase CpaA.
 
     0.885
pilQ1
Component of type IV pilus PilQ1; PilQ.
 
   
 0.819
tadG1
Flp pilus assembly protein TadG.
 
     0.815
tadE1
Pilus assembly protein contains TadE domain.
 
     0.806
ACP27198.1
Conserved hypothetical protein, putative tetratricopeptide repeat protein.
 
     0.797
ACP25031.1
Hypothetical protein.
  
     0.771
ACP25048.1
Hypothetical protein.
  
     0.767
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.