STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP27195.1Putative type II/IV secretion system protein TadB, Flp pilus assembly protein TadB. (336 aa)    
Predicted Functional Partners:
tadC1
Components of type IV pilus TadC.
 
  
 0.994
cpaE1
Pilus assembly protein CpaE.
 
  
 0.981
cpaF2
Pilus assembly protein ATPase CpaF.
 
  
 0.981
cpaB1
Pilus assembly protein CpaB.
 
  
 0.975
tadG1
Flp pilus assembly protein TadG.
 
  
 0.945
capA1
Type IV prepilin peptidase CpaA.
 
  
 0.930
cpaC1
Pilus assembly protein CpaC, contains signal peptide; Belongs to the bacterial secretin family.
 
  
 0.916
pilA1
Probable PilA pilus assembly protein.
 
  
 0.887
tadE1
Pilus assembly protein contains TadE domain.
 
  
 0.868
ACP27198.1
Conserved hypothetical protein, putative tetratricopeptide repeat protein.
 
  
 0.807
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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