Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACP27198.1Conserved hypothetical protein, putative tetratricopeptide repeat protein. (264 aa)    
Predicted Functional Partners:
cpaC1
Pilus assembly protein CpaC, contains signal peptide; Belongs to the bacterial secretin family.
 
 
 0.849
cpaE1
Pilus assembly protein CpaE.
 
  
 0.836
capA1
Type IV prepilin peptidase CpaA.
 
   
 0.826
tadC1
Components of type IV pilus TadC.
 
  
 0.823
pilQ1
Component of type IV pilus PilQ1; PilQ.
 
 
 0.822
cpaD
Pilus assembly protein CpaD.
 
   
 0.822
ACP27195.1
Putative type II/IV secretion system protein TadB, Flp pilus assembly protein TadB.
 
  
 0.815
cpaB1
Pilus assembly protein CpaB.
 
  
 0.814
tadG1
Flp pilus assembly protein TadG.
 
  
 0.806
tadE1
Pilus assembly protein contains TadE domain.
 
  
 0.792
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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