Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACP27325.1Putative plasmid maintenance protein, CcdB. (99 aa)    
Predicted Functional Partners:
ACP27326.1
Hypothetical protein.
 
   
 0.964
ACP27324.1
Hypothetical protein.
       0.727
lepA
GTP-binding protein, LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.605
ACP27323.1
Putative excinuclease ABC, C subunit.
       0.469
ACP24721.1
Putative transposase for insertion sequence NGRIS-22c; Similar to y4rI of pNGR234a.
  
     0.453
ACP25252.1
Putative transposase for insertion sequence NGRIS-22b; Similar to y4rI of pNGR234a.
  
     0.453
ACP26842.1
Putative transposase for insertion sequence NGRIS-22a; Similar to y4rI of pNGR234a.
  
     0.453
ACP27328.1
Predicted major facilitator superfamily MFS-1.
       0.451
ACP25135.1
Putative transposase for insertion sequence NGRIS-20e.
  
     0.430
ACP24307.1
Putative transposase for insertion sequence NGRIS-20f.
  
     0.424
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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