Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACP27398.1Conserved hypothetical protein, UPF0102 family; Belongs to the UPF0102 family. (122 aa)    
Predicted Functional Partners:
rsmI
Tetrapyrrole methylase family protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.824
ACP26415.1
Putative competence protein F; COMF.
 
    0.557
ACP24873.1
DNA processing chain A.
 
  
 0.530
ACP27399.1
Extracellular solute-binding, family 1.
       0.517
ACP27400.1
Binding-protein-dependent transport system inner membrane component.
       0.517
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
       0.516
ugpE
Binding-protein-dependent transport system inner membrane component; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
       0.507
ACP24336.1
Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain.
   
    0.468
ACP26710.1
Sensory box/GGDEF family protein.
   
    0.468
flgL
Predicted flagellar hook-associated protein FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
   
    0.461
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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