STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP27417.1Transcriptional regulator, AraC family. (260 aa)    
Predicted Functional Partners:
ACP25210.1
Putative AraC family transcriptional regulator.
 
 
 0.612
ACP27415.1
B3/B4 tRNA-binding domain protein.
 
     0.597
ACP25917.1
Putative transcriptional regulator, AraC family.
 
 
 0.569
ACP27416.1
Putative transmembrane protein.
       0.562
ACP27418.1
Putative transcriptional regulator, XRE family.
  
    0.551
ACP26699.1
Putative transcriptional regulator, AraC family.
 
   
 0.491
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.485
ACP26385.1
Transcriptional regulator, AraC family.
 
 
 0.455
ACP26485.1
Putative transcriptional regulator, AraC family.
  
     0.454
ACP24430.1
Putative AraC family transcriptional regulatory protein.
  
     0.436
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.