STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP27423.1Thiamine pyrophosphate domain protein, TPP binding region; Belongs to the TPP enzyme family. (617 aa)    
Predicted Functional Partners:
iolB
Myo-inositol catabolism IolB domain protein.
 
 
 0.996
ACP27422.1
Xylose isomerase domain protein, TIM barrel.
 
 
 0.994
ACP27424.1
PfkB family carbohydrate kinase protein.
 
  
 0.969
iolC
Myo-inositol catabolism IolC.
 
  
 0.940
iolD
Myo-inositol catabolism, acetolactate synthase protein IolD; Belongs to the TPP enzyme family.
  
  
 
0.902
idhA2
Myo-inositol 2-dehydrogenase.
 
  
 0.885
iolG
Putative myo-inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
 
  
 0.876
ACP27426.1
Predicted oxidoreductase domain protein.
 
  
 0.867
holH
Inositol utilization protein H HolH.
 
  
 0.844
ACP27425.1
Putative transcriptional regulator.
 
   
 0.784
Your Current Organism:
Sinorhizobium fredii NGR234
NCBI taxonomy Id: 394
Other names: Ensifer fredii NGR234, Plasmid pNGR234a, Rhizobium sp. (strain NGR234), Rhizobium sp. NGR234, S. fredii NGR234, Sinorhizobium sp. NGR234
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