Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DB31_0165TonB-dependent receptor. (1033 aa)    
Predicted Functional Partners:
DB31_0432
Hypothetical protein.
  
     0.745
DB31_2894
Hypothetical protein.
  
     0.717
DB31_0166
Hypothetical protein.
       0.697
DB31_5756
Vibriolysin, extracellular zinc protease.
  
     0.689
DB31_7718
tolB protein precursor protein.
  
     0.665
DB31_7332
Alanyl dipeptidyl peptidase.
 
     0.661
DB31_1629
Peptidase M28.
  
     0.660
DB31_1057
Isochorismatase.
  
  
 0.650
DB31_5322
Peptidyl-dipeptidase A precursor.
  
     0.638
DB31_5959
Hypothetical protein.
  
     0.633
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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