Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DB31_0189Transcriptional regulator, AraC family protein. (341 aa)    
Predicted Functional Partners:
DB31_5032
Glutamate synthase [NADPH] large chain.
    
 0.917
DB31_0187
Dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.853
DB31_0190
Lipid A export ATP-binding/permease protein MsbA.
       0.762
DB31_0191
DNA-binding response regulator.
       0.708
DB31_0192
Sensor histidine kinase.
       0.708
DB31_0188
Hypothetical protein.
    
 0.677
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.648
DB31_0186
Hypothetical protein.
 
     0.493
rpoA
DNA-directed RNA polymerase alpha subunit protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.486
DB31_3544
Transcriptional regulator, TetR family protein.
  
     0.480
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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