Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DB31_0230Transcriptional regulator, TetR family protein. (199 aa)    
Predicted Functional Partners:
DB31_0231
Putative RND efflux membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.614
DB31_3388
Transcriptional regulator, TetR family protein.
  
     0.553
DB31_1749
Transcriptional regulator, TetR family protein.
  
     0.529
DB31_0229
Periplasmic beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
       0.514
pth
Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.511
DB31_6498
Modular polyketide synthase; Belongs to the P-Pant transferase superfamily.
    
 0.462
DB31_1273
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 protein.
  
 
 0.454
DB31_4036
2-polyprenylphenol hydroxylase.
  
 
 0.454
DB31_0228
Metal-dependent hydrolase.
       0.436
DB31_0232
Cobalt-zinc-cadmium resistance protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.417
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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