Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
DB31_0330 | DB31_2731 | Pilin. | Type IV pilus biogenesis protein PilQ. | 0.746 |
DB31_0330 | DB31_2733 | Pilin. | Type IV pilus biogenesis protein PilO. | 0.733 |
DB31_0330 | DB31_2735 | Pilin. | Type IV pilus biogenesis protein PilM. | 0.797 |
DB31_0330 | DB31_2738 | Pilin. | Leader peptidase (Prepilin peptidase); Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.635 |
DB31_0330 | DB31_2883 | Pilin. | Putative general secretion pathway protein L. | 0.709 |
DB31_0330 | DB31_3134 | Pilin. | Hypothetical protein. | 0.645 |
DB31_0330 | DB31_4232 | Pilin. | Hypothetical protein. | 0.664 |
DB31_0330 | DB31_4627 | Pilin. | Hypothetical protein. | 0.622 |
DB31_0330 | DB31_6742 | Pilin. | Hypothetical protein. | 0.645 |
DB31_0330 | DB31_7781 | Pilin. | Type IV pilus biogenesis protein PilQ. | 0.789 |
DB31_2731 | DB31_0330 | Type IV pilus biogenesis protein PilQ. | Pilin. | 0.746 |
DB31_2731 | DB31_2733 | Type IV pilus biogenesis protein PilQ. | Type IV pilus biogenesis protein PilO. | 0.983 |
DB31_2731 | DB31_2735 | Type IV pilus biogenesis protein PilQ. | Type IV pilus biogenesis protein PilM. | 0.983 |
DB31_2731 | DB31_2738 | Type IV pilus biogenesis protein PilQ. | Leader peptidase (Prepilin peptidase); Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.574 |
DB31_2731 | DB31_2883 | Type IV pilus biogenesis protein PilQ. | Putative general secretion pathway protein L. | 0.809 |
DB31_2731 | DB31_4232 | Type IV pilus biogenesis protein PilQ. | Hypothetical protein. | 0.954 |
DB31_2733 | DB31_0330 | Type IV pilus biogenesis protein PilO. | Pilin. | 0.733 |
DB31_2733 | DB31_2731 | Type IV pilus biogenesis protein PilO. | Type IV pilus biogenesis protein PilQ. | 0.983 |
DB31_2733 | DB31_2735 | Type IV pilus biogenesis protein PilO. | Type IV pilus biogenesis protein PilM. | 0.995 |
DB31_2733 | DB31_2738 | Type IV pilus biogenesis protein PilO. | Leader peptidase (Prepilin peptidase); Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.642 |
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