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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DB31_0364Sphingosine-1-phosphate lyase 1. (506 aa)    
Predicted Functional Partners:
DB31_5032
Glutamate synthase [NADPH] large chain.
    
 0.970
DB31_4525
Pyridoxal-dependent decarboxylase.
  
  
 
0.955
DB31_6483
Long-chain-fatty-acid--CoA ligase.
  
 
 0.951
DB31_0096
Malonyl CoA-acyl carrier protein transacylase.
    
 0.915
DB31_6481
Phenolpthiocerol synthesis type-I polyketide synthase PPSD.
  
 
 0.901
DB31_0362
Xylulose kinase.
 
 
 0.788
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.775
DB31_6457
Malonyl CoA-acyl carrier protein transacylase.
   
 
 0.742
DB31_6498
Modular polyketide synthase; Belongs to the P-Pant transferase superfamily.
    
 0.738
DB31_8912
Chorismate mutase I.
    
 0.734
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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