Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
DB31_0049 | DB31_0704 | Flagellar motor switch protein FliM. | Response regulator of zinc sigma-54-dependent two-component system. | 0.826 |
DB31_0049 | DB31_0705 | Flagellar motor switch protein FliM. | Sensory box sensor histidine kinase. | 0.926 |
DB31_0049 | DB31_2408 | Flagellar motor switch protein FliM. | Hypothetical protein. | 0.786 |
DB31_0049 | DB31_2779 | Flagellar motor switch protein FliM. | Chemotaxis protein methyltransferase CheR; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.999 |
DB31_0049 | DB31_3208 | Flagellar motor switch protein FliM. | Two-component hybrid sensor and regulator. | 0.998 |
DB31_0049 | DB31_4658 | Flagellar motor switch protein FliM. | Two-component hybrid sensor and regulator. | 0.965 |
DB31_0049 | DB31_4702 | Flagellar motor switch protein FliM. | Two-component hybrid sensor and regulator. | 0.997 |
DB31_0049 | DB31_7587 | Flagellar motor switch protein FliM. | Sensor histidine kinase/response regulator. | 0.875 |
DB31_0049 | DB31_9005 | Flagellar motor switch protein FliM. | Chemotaxis protein methyltransferase CheR. | 0.989 |
DB31_0704 | DB31_0049 | Response regulator of zinc sigma-54-dependent two-component system. | Flagellar motor switch protein FliM. | 0.826 |
DB31_0704 | DB31_0705 | Response regulator of zinc sigma-54-dependent two-component system. | Sensory box sensor histidine kinase. | 0.812 |
DB31_0704 | DB31_2408 | Response regulator of zinc sigma-54-dependent two-component system. | Hypothetical protein. | 0.731 |
DB31_0704 | DB31_2779 | Response regulator of zinc sigma-54-dependent two-component system. | Chemotaxis protein methyltransferase CheR; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.898 |
DB31_0704 | DB31_3208 | Response regulator of zinc sigma-54-dependent two-component system. | Two-component hybrid sensor and regulator. | 0.842 |
DB31_0704 | DB31_3657 | Response regulator of zinc sigma-54-dependent two-component system. | RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.781 |
DB31_0704 | DB31_4658 | Response regulator of zinc sigma-54-dependent two-component system. | Two-component hybrid sensor and regulator. | 0.752 |
DB31_0704 | DB31_4702 | Response regulator of zinc sigma-54-dependent two-component system. | Two-component hybrid sensor and regulator. | 0.936 |
DB31_0704 | DB31_7587 | Response regulator of zinc sigma-54-dependent two-component system. | Sensor histidine kinase/response regulator. | 0.838 |
DB31_0704 | DB31_9005 | Response regulator of zinc sigma-54-dependent two-component system. | Chemotaxis protein methyltransferase CheR. | 0.745 |
DB31_0705 | DB31_0049 | Sensory box sensor histidine kinase. | Flagellar motor switch protein FliM. | 0.926 |
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