Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DB31_0969Hypothetical protein. (330 aa)    
Predicted Functional Partners:
DB31_0968
Hypothetical protein.
 
 0.988
DB31_3411
Phytoene synthase.
 
  
 0.858
DB31_3414
Hydroxyneurosporene synthase.
  
    0.826
DB31_1394
Protoporphyrinogen IX oxidase, aerobic, HemY; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
   
 
 0.795
DB31_0966
Hypothetical protein.
       0.773
DB31_0967
Hypothetical protein.
       0.773
DB31_0970
Hypothetical protein.
       0.773
DB31_4062
Phytoene desaturase, neurosporene or lycopene producing.
 
 
 0.769
DB31_6287
Phytoene desaturase, neurosporene or lycopene producing.
 
 
 0.767
DB31_3410
Phytoene dehydrogenase.
 
 
 0.763
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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