Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DB31_0992Glycolate dehydrogenase. (462 aa)    
Predicted Functional Partners:
DB31_7006
Malate synthase; Belongs to the malate synthase family.
  
 
 0.922
DB31_4277
Fe-S protein.
  
  
 
0.920
DB31_7005
Isocitrate lyase.
     
 0.913
DB31_7365
Phosphoglycolate phosphatase.
    
 0.901
DB31_3961
Phosphoglycolate phosphatase.
    
 0.900
DB31_0764
Aspartate aminotransferase (AspB-4).
    
  0.888
DB31_0774
D-amino-acid oxidase.
     
 0.838
DB31_0690
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 0.830
DB31_4429
Ureidoglycolate hydrolase.
     
  0.782
DB31_5032
Glutamate synthase [NADPH] large chain.
    
 0.722
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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