DB31_1025 protein (Hyalangium minutum) - STRING interaction network

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Score

DB31_1025

ATP-dependent helicase HrpA. (1209 aa)

Predicted Functional Partners:

DB31_2005

0.841

rpsD

0.835

rpsK

0.825

DB31_2496

0.791

DB31_5117

0.773

DB31_5352

0.773

rpsE

0.770

rph

0.700

DB31_0130

0.647

DB31_1937

0.647

Your Current Organism:

Hyalangium minutum

NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DB31_0130	DB31_1025	DB31_0130	DB31_1025	ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.	ATP-dependent helicase HrpA.	0.647
DB31_0130	DB31_2005	DB31_0130	DB31_2005	ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.	Ribonuclease D.	0.644
DB31_0130	DB31_2496	DB31_0130	DB31_2496	ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.	Hypothetical protein.	0.704
DB31_0130	DB31_5117	DB31_0130	DB31_5117	ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.	SSU ribosomal protein S1p; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.678
DB31_0130	DB31_5352	DB31_0130	DB31_5352	ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.	SSU ribosomal protein S1p.	0.678
DB31_0130	rph	DB31_0130	DB31_2428	ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.499
DB31_0130	rpsD	DB31_0130	DB31_4918	ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.	SSU ribosomal protein S4p (S9e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.791
DB31_0130	rpsE	DB31_0130	DB31_4908	ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.	SSU ribosomal protein S5p (S2e); Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.733
DB31_0130	rpsK	DB31_0130	DB31_4917	ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.	SSU ribosomal protein S11p (S14e); Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.698
DB31_1025	DB31_0130	DB31_1025	DB31_0130	ATP-dependent helicase HrpA.	ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.	0.647
DB31_1025	DB31_1937	DB31_1025	DB31_1937	ATP-dependent helicase HrpA.	Cold-shock DEAD-box protein A; Belongs to the DEAD box helicase family.	0.647
DB31_1025	DB31_2005	DB31_1025	DB31_2005	ATP-dependent helicase HrpA.	Ribonuclease D.	0.841
DB31_1025	DB31_2496	DB31_1025	DB31_2496	ATP-dependent helicase HrpA.	Hypothetical protein.	0.791
DB31_1025	DB31_5117	DB31_1025	DB31_5117	ATP-dependent helicase HrpA.	SSU ribosomal protein S1p; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.773
DB31_1025	DB31_5352	DB31_1025	DB31_5352	ATP-dependent helicase HrpA.	SSU ribosomal protein S1p.	0.773
DB31_1025	rph	DB31_1025	DB31_2428	ATP-dependent helicase HrpA.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.700
DB31_1025	rpsD	DB31_1025	DB31_4918	ATP-dependent helicase HrpA.	SSU ribosomal protein S4p (S9e); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.835
DB31_1025	rpsE	DB31_1025	DB31_4908	ATP-dependent helicase HrpA.	SSU ribosomal protein S5p (S2e); Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.770
DB31_1025	rpsK	DB31_1025	DB31_4917	ATP-dependent helicase HrpA.	SSU ribosomal protein S11p (S14e); Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.825
DB31_1937	DB31_1025	DB31_1937	DB31_1025	Cold-shock DEAD-box protein A; Belongs to the DEAD box helicase family.	ATP-dependent helicase HrpA.	0.647