Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DB31_1031Hypothetical protein. (1087 aa)    
Predicted Functional Partners:
DB31_4702
Two-component hybrid sensor and regulator.
   
 0.861
DB31_7854
Hypothetical protein.
 
 
 0.771
DB31_3208
Two-component hybrid sensor and regulator.
   
 0.755
DB31_4378
High-affnity carbon uptake protein Hat/HatR.
 
 
  0.693
DB31_5761
Signal transduction histidine kinase.
  
 0.692
DB31_4380
High-affnity carbon uptake protein Hat/HatR.
 
 
 0.675
DB31_7947
Hypothetical protein.
 
 
 0.672
DB31_0954
WD-40 repeat protein.
 
 
 0.671
DB31_7344
TPR repeat protein.
  
  
  0.661
DB31_6362
Sensory box histidine kinase/response regulator.
   
 0.658
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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