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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DB31_1329RNA polymerase sigma-70 factor, ECF subfamily protein. (197 aa)    
Predicted Functional Partners:
DB31_1330
Hypothetical protein.
       0.787
DB31_3161
RNA polymerase, sigma-24 subunit, ECF subfamily protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.775
DB31_2889
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
DB31_4833
RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
DB31_0161
RNA polymerase sigma-70 factor, ECF subfamily protein.
  
     0.773
DB31_9089
RNA polymerase sigma-70 factor, ECF subfamily protein.
  
   
 0.766
DB31_7123
RNA polymerase sigma-70 factor, ECF subfamily protein.
  
     0.760
DB31_8911
RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.759
DB31_5272
RNA polymerase sigma-70 factor, ECF subfamily protein.
  
     0.743
DB31_2612
RNA polymerase sigma-70 factor, ECF subfamily protein.
  
     0.712
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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