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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DB31_1629Peptidase M28. (561 aa)    
Predicted Functional Partners:
DB31_7332
Alanyl dipeptidyl peptidase.
 
    0.719
DB31_3369
Hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
 
  
 0.710
DB31_7712
Aminopeptidase.
  
     0.707
DB31_5149
Hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
 
  
 0.699
DB31_2499
Hypothetical protein.
  
    0.693
DB31_6976
Hypothetical protein.
  
     0.665
DB31_0165
TonB-dependent receptor.
  
     0.660
DB31_2894
Hypothetical protein.
  
     0.652
DB31_5027
Hypothetical protein.
  
     0.638
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
       0.569
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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