Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DB31_2736Type IV fimbriae expression regulatory protein PilR. (468 aa)    
Predicted Functional Partners:
DB31_4702
Two-component hybrid sensor and regulator.
  
 0.895
DB31_2051
Flagellar sensor histidine kinase FleS.
  
 
  0.878
DB31_7287
Sensor histidine kinase.
  
 
  0.874
DB31_4946
Flagellar sensor histidine kinase FleS.
 
 0.870
DB31_6000
Flagellar sensor histidine kinase FleS.
  
 
  0.845
DB31_0572
Flagellar sensor histidine kinase FleS.
  
 
  0.841
DB31_2779
Chemotaxis protein methyltransferase CheR; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 0.837
DB31_3208
Two-component hybrid sensor and regulator.
  
 0.833
DB31_0049
Flagellar motor switch protein FliM.
  
 
 0.825
DB31_3657
RNA polymerase sigma-54 factor RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.798
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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