Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DB31_3206Short chain fatty acid transporter. (447 aa)    
Predicted Functional Partners:
DB31_5121
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B.
 
  
 0.709
DB31_3205
Hypothetical protein.
       0.651
DB31_5120
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A.
 
  
 0.559
DB31_3207
Hypothetical protein.
       0.525
DB31_7438
3-oxoadipate CoA-transferase subunit A.
 
  
 0.488
DB31_6874
Carbon starvation protein A.
  
     0.461
DB31_7439
3-oxoadipate CoA-transferase subunit B.
 
  
 0.453
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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