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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DB31_3283Transcriptional regulator, MerR family protein. (167 aa)    
Predicted Functional Partners:
DB31_5032
Glutamate synthase [NADPH] large chain.
    
 0.959
DB31_3282
Hypothetical protein.
 
     0.842
DB31_6205
Fumarate hydratase class I protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.692
DB31_6216
Fumarate hydratase class I protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.692
DB31_6362
Sensory box histidine kinase/response regulator.
   
 0.666
DB31_8326
Hypothetical protein.
  
 
 0.661
DB31_3959
Histidine kinase.
    
 0.627
DB31_2539
Glutamine synthetase family protein.
  
 
 0.604
DB31_4105
Glutamine synthetase type I.
  
 
 0.604
rpoB
DNA-directed RNA polymerase beta subunit protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.600
Your Current Organism:
Hyalangium minutum
NCBI taxonomy Id: 394096
Other names: CIP 109157, DSM 14724, H. minutum, Hyalangium minutum Reichenbach 2007, JCM 12630, strain NOCB-2
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